If you don't know about this command you should:
strace - trace system calls and signals
You can see which files a specific program touches and a lot, lot more.
Here is a blog that goes into more than sufficient detail about the topic:
http://chadfowler.com/blog/2014/01/26/the-magic-of-strace/
I was trying to get Crayon Physics to work on a Linux box and the error messages were less than helpful, but I was able to make forward progress thanks to this program.
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